Publications

International Journals

  1. P V Sunil Kumar, G Gopakumar, Inferring Disease and Pathway Associations of Long Non Coding RNAs using Heterogeneous Information Network Model, Journal of Bioinformatics and Computational Biology, Jun 2019. DOI: 10.1142/S0219720019500203
  2. R. Visakh, K. A. Abdul Nazeer, ‘Multi-network approach to identify differentially methylated gene communities in cancer’, Gene, Volume 697, May 2019, Pages 227-237, ISSN 0378-1119.
  3. P.V. Sunil Kumar; M. Manju; G. Gopakumar, ” Function prediction of cancer-related LncRNAs using heterogeneous information network model“, International Journal of Data Mining and Bioinformatics (IJDMB), Vol. 21, No. 4, 2018.
  4. Madhavan, M, Gopalakrishnan GAn Effective Sequence Structure Representation for Long Non-Coding RNA Identification and Cancer Association using Machine Learning Methods. ACM Applied Computing Review. 18(3):49-58, 2018.
  5. Visakh R and K A Abdul Nazeer, “DEEPAligner: Deep encoding of pathways to align epigenetic signatures”, Computational Biology and Chemistry (Elsevier), Vol. 72, February 2018, pp. 87-95.
  6. N. Nidheesh, K. A. Abdul Nazeer, and P. M. Ameer, “An enhanced deterministic K-Means clustering algorithm for cancer subtype prediction from gene expression data”, Computers in Biology and Medicine (Elsevier), Vol. 91, October 2017, pp. 213-221.
  7. Visakh R and K A Abdul Nazeer, “Identifying epigenetically dysregulated pathways from pathway-pathway interaction networks”, Computers in Biology and Medicine (Elsevier), September 2016, pp. 160-167.
  8. P. B. Jayaraj, K. Rahamathulla and G. Gopakumar, “A Data parallel maximum common subgraph algorithm for Drug discovery applications”,2016 IEEE International Parallel and Distributed Processing Symposium Workshops, May 2016, USA.
  9. P. B. Jayaraj, Mathias K.Ajay, M. Nufail, G. Gopakumar and U. C. A. Jaleel, GPURFSCREEN: a GPU based virtual screening tool using random forest classifier, Journal of Cheminformatics (2016), 8:12.
  10. Shabana K. M., K. A. Abdul Nazeer, M. Pradhan and Mathew Palakal, “A computational method for drug repositioning using publicly available gene expression data”, BMC Bioinformatics. 16 (Suppl 17), 2015

International Conferences

  1. P V Sunil Kumar , G Gopakumar , “Relrank: An Algorithm for Relevance-Based Ranking of Meta-Paths in a Heterogeneous Information Network”, IEEE Recent Advances in Intelligent Computational Systems (RAICS), Thiruvananthapuram, 2018.
  2. Sreeshma C M, Manu Madhavan, Gopakumar G. , ” Identification of lncRNAs from inherent features using machine learning techniques”, 26 October. Int Conference on Bioinformatics and System Biology (BSB2018). , IIIT Allahabad, 2018.
  3. Manu Madhavan and G. Gopakumar, “A tf-idf based Topic Model for identifying lncRNAs from genomic background”,33rd ACM/SIGAPP Symposium On Applied Computing (ACM-SAC), France, April 2018
  4. Mohammed Siyad B, Visakh R, and K A Abdul Nazeer, “Disease Prediction using Optimal Feature Selection from Epigenetic Data”, International Conference on Innovations in Power and Advanced Computing Technologies (IEEE), Vellore, India, April 2017, pp. 1-7.