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- P V Sunil Kumar, G Gopakumar, Inferring Disease and Pathway Associations of Long Non Coding RNAs using Heterogeneous Information Network Model, Journal of Bioinformatics and Computational Biology, Jun 2019. DOI: 10.1142/S0219720019500203
- R. Visakh, K. A. Abdul Nazeer, ‘Multi-network approach to identify differentially methylated gene communities in cancer’, Gene, Volume 697, May 2019, Pages 227-237, ISSN 0378-1119.
- P.V. Sunil Kumar; M. Manju; G. Gopakumar, ” Function prediction of cancer-related LncRNAs using heterogeneous information network model“, International Journal of Data Mining and Bioinformatics (IJDMB), Vol. 21, No. 4, 2018.
- An Effective Sequence Structure Representation for Long Non-Coding RNA Identification and Cancer Association using Machine Learning Methods. ACM Applied Computing Review. 18(3):49-58, 2018. .
- Visakh R and K A Abdul Nazeer, “DEEPAligner: Deep encoding of pathways to align epigenetic signatures”, Computational Biology and Chemistry (Elsevier), Vol. 72, February 2018, pp. 87-95.
- N. Nidheesh, K. A. Abdul Nazeer, and P. M. Ameer, “An enhanced deterministic K-Means clustering algorithm for cancer subtype prediction from gene expression data”, Computers in Biology and Medicine (Elsevier), Vol. 91, October 2017, pp. 213-221.
- Visakh R and K A Abdul Nazeer, “Identifying epigenetically dysregulated pathways from pathway-pathway interaction networks”, Computers in Biology and Medicine (Elsevier), September 2016, pp. 160-167.
- P. B. Jayaraj, K. Rahamathulla and G. Gopakumar, “A Data parallel maximum common subgraph algorithm for Drug discovery applications”,2016 IEEE International Parallel and Distributed Processing Symposium Workshops, May 2016, USA.
- P. B. Jayaraj, Mathias K.Ajay, M. Nufail, G. Gopakumar and U. C. A. Jaleel, GPURFSCREEN: a GPU based virtual screening tool using random forest classifier, Journal of Cheminformatics (2016), 8:12.
- Shabana K. M., K. A. Abdul Nazeer, M. Pradhan and Mathew Palakal, “A computational method for drug repositioning using publicly available gene expression data”, BMC Bioinformatics. 16 (Suppl 17), 2015
- P V Sunil Kumar , G Gopakumar , “Relrank: An Algorithm for Relevance-Based Ranking of Meta-Paths in a Heterogeneous Information Network”, IEEE Recent Advances in Intelligent Computational Systems (RAICS), Thiruvananthapuram, 2018.
- Identification of lncRNAs from inherent features using machine learning techniques”, 26 October. Int Conference on Bioinformatics and System Biology (BSB2018). , IIIT Allahabad, 2018. , ”
- Manu Madhavan and G. Gopakumar, “A tf-idf based Topic Model for identifying lncRNAs from genomic background”,33rd ACM/SIGAPP Symposium On Applied Computing (ACM-SAC), France, April 2018
- Mohammed Siyad B, Visakh R, and K A Abdul Nazeer, “Disease Prediction using Optimal Feature Selection from Epigenetic Data”, International Conference on Innovations in Power and Advanced Computing Technologies (IEEE), Vellore, India, April 2017, pp. 1-7.